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In a deep lake and reservoir, thermal stratification is of great importance for characteristics of hydrodynamic mixing of the waterbody, and thereby influencesvertical distribution of dissolved oxygen, substances, nutrients, and the phytoplankton community. The purpose of this study, was to project the effect of a future climate change scenario on water temperature, stratification strength, and thermal stability in the Soyanggang Reservoir in the Han River basin of South Korea, using a suite of mathematical models; SWAT, HEC-ResSim, and CE-QUAL-W2(W2). W2 was calibrated with historical data observed 2005-2015. Using climate data generated by HadGEM2-AO with the RCP 4.5 scenario, SWAT predicted daily reservoir inflow 2016-2070, and HEC-ResSim simulated changes in reservoir discharge and water level, based on inflow and reservoir operation rules. Then, W2 was applied, to predict long-term continuous changes of water temperature, in the reservoir. As a result, the upper layer (5m below water surface) and lower layer (5m above bottom) water temperatures, were projected to rise 0.0191°C/year(p<0.05) and 0.008°C/year(p<0.05), respectively, in response to projected atmospheric temperature rise rate of 0.0279°C/year(p<0.05). Additionally, with increase of future temperature, stratification strength of the reservoir is projected to be stronger, and the number of the days when temperature difference of the upper layer and the lower layer becomes greater than 5°C, also increase. Increase of water temperature on the surface of the reservoir, affected seasonal growth rate of the algae community. In particular, the growth rate of cyanobacteria increased in spring, and early summer.